Medical Store Billing Software India — Prescriptions, Batches, Expiry and GST All in One Place
Running a medical store is a different kind of pressure. Every product has a batch number, an expiry date, and a specific GST rate. A customer hands you a prescription, expects fast service, and does not care that you are simultaneously tracking stock, managing supplier invoices, and making sure nothing expired is sitting on your shelf.
Accountune is medical store billing software built specifically
for Indian chemists and pharmacies — batch tracking, expiry
alerts, GST billing, and WhatsApp invoicing starting at
₹799/year. No training required. No accountant needed for
daily operations.
Most medical store owners handle all of this manually — or with old software that was never really built for a pharmacy. The result is billing mistakes, expired stock that gets missed, and GST return preparation that takes three times longer than it should.
Medical store billing software built for Indian chemists and pharmacies changes all of that. Batch-wise inventory, expiry date alerts, prescription management, GST-compliant invoicing, and supplier account tracking — all handled from one screen without needing an accountant or IT person by your side.
If you are still writing bills by hand or struggling with generic billing software that does not understand how a pharmacy works, this is worth a closer look.
- Generate GST bills with correct HSN and SAC codes in seconds
- Track every batch with expiry date alerts before stock goes bad
- Manage prescriptions and link them directly to sale invoices
- Handle supplier purchases, returns, and outstanding payments easily
- Built specifically for Indian chemists and pharmacies — not adapted from generic retail software.
Medical Store Billing Software That Actually Understands Pharmacy Operations
Most billing software available in India is made for general retail. You can force it to work for a medical store — but you will spend more time working around its limitations than actually running your business.
A pharmacy is not like a clothing store or a grocery shop. You deal with scheduled drugs, non-scheduled medicines, surgical items, and healthcare products — each with different GST rates, different compliance requirements, and different inventory rules. Batch numbers are mandatory. Expiry tracking is not optional. And one wrong entry on a drug invoice can create serious problems during a regulatory check.
This software was designed specifically for medical stores and chemist shops. Every feature inside it exists because pharmacy owners asked for it — not because it was borrowed from a generic retail billing tool and relabeled.
How Accountune Works for Chemist Shops and Pharmacies in India
Batch tracking, expiry alerts, prescription management, and GST compliance — built for how Indian medical stores actually operate.
Fast Billing at the Counter
Search any medicine by name, brand, salt composition, or barcode. Product details like price, batch, expiry, and GST rate load instantly. Add quantity and generate the invoice in under 15 seconds. Prescription and customer details can be attached to the bill for future reference.
Batch-Wise Inventory Tracking
Each medicine batch is tracked separately with batch number, manufacturing date, expiry date, and purchase price. The system automatically follows FEFO (First Expiry First Out) so the oldest batch is sold first and stock rotates correctly.
Expiry Date Alerts
Get automatic alerts 30, 60, or 90 days before any medicine batch expires. This helps you return stock to suppliers, push sales of near-expiry items, or clear inventory before it becomes dead stock.
Prescription Management
Attach scanned prescriptions directly to invoices. Doctor name, patient name, and prescription date are stored with the sale record, making audits and inspections easy without searching through paper files.
GST Billing with Correct HSN Codes
Medicines fall under multiple GST slabs like 0%, 5%, and 12%. The system includes a built-in HSN database so correct GST rates apply automatically. CGST, SGST, and IGST are calculated properly for every invoice.
Supplier Purchase & Return Management
Record medicine purchases with batch details, expiry dates, and purchase prices. Track supplier payments and create purchase returns against original invoices when stock is damaged or near expiry.
Near-Expiry Stock Report
View all batches expiring within the next 30, 60, or 90 days in one report. The list shows product name, batch number, quantity, expiry date, and supplier details so you can take action early.
Credit Customer & Doctor Accounts
Maintain credit ledgers for clinics, hospitals, and regular customers. Track purchase history, payments, and outstanding balances. Send WhatsApp reminders and set credit limits for better cash flow control.
Salt & Composition Based Search
Search medicines by salt name or composition to quickly find branded and generic alternatives. This helps pharmacists locate the correct medicine instantly even in large inventories.
Business Reports & Analytics
View daily sales, top-selling medicines, slow-moving stock, expiry losses, supplier purchase summaries, and monthly profit reports — all from one dashboard for better business decisions.
Multi-User Access with Role Control
If you have a pharmacist at the counter, an assistant at billing, and yourself checking accounts from the back — everyone can work simultaneously with their own login and access level.
Billing staff can create invoices but cannot see purchase prices or profit margins. Accountants can access financial reports without touching billing operations. You control exactly what each user can see and do inside the system.
These pharmacy billing headaches are
costing your medical store real money every day
Vijay runs a medical store in Nagpur. Good location, 12 years in business, loyal customers. Last March a drug inspector visited and asked for batch records of three medicines sold six months ago. Vijay spent four hours digging through paper registers before he found two of them. The third one he never found. That is the moment most chemists realize their system has a serious gap — not when sales are slow, but when accountability suddenly matters.
Expired medicines quietly sitting on your shelf
Priya runs a chemist shop in Pune. Last Diwali season, she found three full strips of a blood pressure medicine expired two months back — still on the shelf, still being picked up by staff during billing. Nobody had checked. She lost ₹4,200 returning them to the distributor and he only took half of it back. Manual expiry tracking fails because no one remembers to check every batch every week. By the time you notice, the damage is done.
GST billing for medicines is a daily confusion
Medicines fall under 0%, 5%, and 12% GST slabs. Surgical items have different rates. Some products are exempted entirely. During a busy afternoon with six customers waiting, manually applying the right tax to each product is exactly where mistakes happen. One wrong rate does not feel serious — until your CA finds 40 such entries in GSTR-1 three months later and the correction process takes half a day.
Batch records are on paper — or missing completely
Drug licensing rules require batch-wise records for scheduled medicines. Most small medical stores keep this in a register at the back. But when a customer disputes a sale, a distributor asks about a return, or an inspector walks in — finding the right batch entry and matching it to the original purchase invoice is slow and stressful. And sometimes the entry simply is not there.
Distributor payments tracked in memory
You buy from four or five distributors every week. Each has a different credit period — 15 days, 30 days, sometimes 45. Without proper purchase records, you rely on memory and incoming calls to know what is due. One missed payment puts your account on hold. When you cannot order fast-moving medicines for two days because of a payment dispute, your customers quietly start going to the shop next door.
Searching by salt name wastes time during rush hours
A prescription says Paracetamol 500mg. You stock Crocin, Calpol, and Metacin — all the same salt, different brands. With manual billing, staff searches shelf by shelf while the customer waits. Three more people are behind them. In a busy medical store, 45 extra seconds per customer adds up to a long queue by afternoon. Some people just leave.
Prescription records lost in a growing paper folder
Many states require prescription records for scheduled drugs. Most chemists maintain this — but in a physical folder that gets thicker every week. Finding a prescription from three months ago when a customer questions a sale, or when a licensing officer asks, takes time you do not have. And if that folder goes missing during a busy week, those records are gone for good.
Expiry alerts 30, 60, 90 days before — not after
Set your preferred alert window per batch. Accountune notifies you automatically when any medicine is approaching expiry — giving you time to return stock to the distributor, push sales of near-expiry items, or stop reordering. No more finding expired strips during billing. No more return losses that could have been avoided with one week's notice.
✓ Automatic expiry alertsCorrect GST on every medicine invoice — automatically
Each product is saved once with its correct GST slab and HSN code. After that, every invoice applies the right tax on its own — 0%, 5%, or 12%, whichever applies. CGST and SGST split correctly every single time. Your GSTR-1 is clean at month-end. No corrections, no half-day fixes with your CA.
✓ Auto GST with HSN codesFull batch history — searchable in seconds, not hours
Every purchase is recorded with batch number, manufacturing date, expiry, and buying price. Accountune follows FEFO automatically — oldest batch sells first, stock rotates correctly. When an inspector visits or a customer dispute comes up, the batch record is found in under 10 seconds. No register. No hunt. No stress.
✓ Batch-wise inventory trackingEvery distributor account tracked — payments, dues, history
Each purchase from each distributor is recorded when goods arrive. Outstanding amount per distributor is visible in one tap. Due dates are tracked. When a distributor calls, you know exactly what you owe and against which invoice — no guessing, no awkward calls. Your supply does not get disrupted because of a payment you forgot.
✓ Distributor payment trackingSearch by salt, brand, or barcode — bill in under 15 seconds
Type Paracetamol 500mg and every matching brand appears immediately. Scan a barcode and the product loads in two seconds. Staff finds the right medicine fast, prices and GST fill automatically, and the customer is done in under a minute. During morning prescription rush and evening walk-ins, this speed keeps your queue moving.
✓ Salt & composition searchPrescriptions stored digitally — attached to the invoice
Attach a scanned prescription to the sale invoice at billing time. Doctor name, patient name, date — all saved with the record. Searchable by customer, medicine, or date in seconds. When a licensing officer asks or a customer questions a sale three months later, you have the record ready. No folder. No missing papers.
✓ Digital prescription recordsMost chemists discover their billing system has a gap only when something goes wrong — an inspection, a distributor dispute, an expired batch found during billing. The fix is not complicated. Batch tracking, expiry alerts, and correct GST are not features built only for big pharmacy chains. Every medical store in India needs them. Now they are affordable enough for every chemist shop too.
Built for Every Kind of Medical Store in India
Accountune is not generic retail software relabeled for pharmacies. It was designed around how Indian chemists and medical stores actually operate — from single-counter shops to multi-branch chains.
Accountune vs Marg ERP — Which is Right for Your Medical Store?
Marg is the most popular desktop pharmacy software in India with 10 lakh+ installations. Here is an honest side-by-side comparison so you can decide what fits your shop.
| Feature | Accountune Recommended for small stores | Marg ERP |
|---|---|---|
| Starting Price | ₹799/year — all features included | ₹15,000–50,000 one-time + AMC |
| Installation | Cloud — no installation, works in browser No IT needed | Windows desktop only — IT setup required |
| Mobile Access | ✓ Full access on any device | ✗ Not available natively |
| WhatsApp Billing | ✓ Built-in — one click | ✗ Not available |
| Batch Tracking | ✓ FEFO auto-rotation | ✓ Available |
| Expiry Alerts | ✓ 30/60/90 days automatic | ✓ Available |
| GST Filing | ✓ GSTR-1 & GSTR-3B auto-generated | ✓ Available |
| Setup Time | 30 minutes — no trainer needed | Days — requires trained person |
| Data Backup | ✓ Automatic cloud backup | Manual — data on local computer |
| Free Trial | ✓ Full access — no card needed | Limited demo only |
| Best For | Single-counter shops to small chains | Large distributors & wholesalers |
Data based on publicly available pricing and feature information. April 2026.
One Price. All Features Included.
No separate charge for batch tracking, expiry alerts, or WhatsApp billing. Every plan includes all medical store features. Pick the plan that matches your shop size.
- GST billing with HSN codes
- Batch-wise inventory + expiry alerts
- WhatsApp billing in one click
- Distributor account management
- Prescription record storage
- GSTR-1 & GSTR-3B reports
- 1 user login
No credit card required
- Everything in Lite
- 3 user logins with role access
- E-Way Bill generation
- CA remote access included
- Salt & composition search
- Credit customer statements
- WhatsApp payment reminders
No credit card required
- Everything in Growth
- 5 user logins
- E-Invoicing with IRN generation
- Multi-branch management
- Combined branch reports
- 1,000 E-Way Bills included
- Priority support
No credit card required
How to Switch from Marg ERP to Accountune
Less painful than you expect. Most medical stores are fully operational on Accountune within a weekend. You do not lose your existing data and your CA continues receiving reports in the same format.
Start Free Trial — See It Yourself →Medical Store Owners from Every Corner of India Use Accountune
From large metros to small towns — Accountune works for any Indian medical store regardless of location, size, or monthly turnover.
What Makes Accountune Different
Expert guidance to ensure accurate, compliant, and hassle-free GST billing.
Built For Indian GST
- Create GST Invoices
- Auto Calculate Taxes
- E-Way Bill Generation
Faster Billing, Fewer Mistakes
Simple For Non - Accountants
- Track Expense & Income
- Manage Ledgers
- Bank Reconciliation
Complete Financial Report
All In One Business Management
- Role Based Permission
- Activity Logs
- Secure Login
Collaborate Securely With Your Team
Secure Cloud Backup
- Sales Analysis
- Profit & Loss Report
- Customizable Dashboard
Make Data – Driven Decisions
Easy To Personalize
- Send Payment Reminders
- Take Dues
- Multiple Payment Options
Improved Cash Flows
Smart Inventory
- Automatic Backups
- Data Encryption
- Access From Any Device
Your Data Is Always Safe & Accessible
Why Business Choose Accountune Over Other Billing Software
See how Accountune compares with other people billings and accounting tools
| Features |
Accountune
Recommended
|
Tally
|
Zoho Books
|
Vyapar
|
|---|---|---|---|---|
| GST Billing | ✔ | ✔ | ✔ | ✔ |
| Inventory Management | ✔ | ✔ | ✔ | ✔ |
| Cloud Based | ✔ | ✖ | ✔ | Partial |
| Multi-User Access | ✔ | Limited | ✔ | ✔ |
| Automatic GST Reports | ✔ | ✔ | ✔ | ✔ |
| Mobile App | ✔ | Limited | ✔ | ✔ |
| Starting Price | ₹799 | ₹5,000+ | ₹1299 | ₹1099 |
Why Businesses Choose Accountune
Expert guidance to ensure accurate, compliant, and hassle-free GST billing.
Built For Indian GST
Built for India’s GST rules to simplify compliant billing and tax management.
All In One Platform
Built for India’s GST rules to simplify compliant billing and tax management.
No Accounting Needed
Built for India’s GST rules to simplify compliant billing and tax management.
Trusted Cloud Security
Built for India’s GST rules to simplify compliant billing and tax management.
Everything Your Business Needs In One Platform
Expert guidance to ensure accurate, compliant, and hassle-free GST billing.
Trusted by Thousands of Indian Businesses
Over 12,000 businesses rely on Accountune for fast and accurate GST billing & inventory management.
Priya Sharma
Owner – Wholesale Grocery, Mumbai
Reduced missing payments by 80%
"Accountune simplified our GST invoicing. Tracking inventory and payments is now clear and stress-free."
Rajesh Patel
Owner – Electronics Store, Jaipur
Saved 40% billing time in first month
"Accountune helped us reduce billing errors and track inventory in real time. GST billing is now fast and stress-free."
Sandeep Agarwal
Owner – Garments Shop, Delhi
Cut billing time by 60% with automation
"Billing and stock management is now 2x faster. I highly recommend Accountune to business owners!"
Suresh Verma
Owner – Kirana Store, Indore
Udhaar tracking saved ₹15,000 in dues
"Pehle udhaar ka hisab diary mein tha. Ab Accountune mein sab track hota hai. Ek bhi payment miss nahi hoti."
Meena Joshi
Owner – Medical Store, Pune
Zero expiry losses after using Accountune
"Expiry alerts ne meri bahut badi loss se bacha liya. Batch tracking ab automatic hai. GST bhi sahi hota hai."
Amit Gupta
Owner – Hardware Store, Nagpur
Stock management 3x faster now
"1200 items ka stock manually track karna mushkil tha. Accountune ne sab easy kar diya. Reorder alerts bhi milte hain."
Trusted by Thousands of Indian Businesses
Over 12,000 businesses rely on Accountune for fast and accurate GST billing & inventory management.
Priya Sharma
Owner – Wholesale Grocery, Mumbai
Reduced missing payments by 80%
"Accountune simplified our GST invoicing. Tracking inventory and payments is now clear and stress-free."
Rajesh Patel
Owner – Electronics Store, Jaipur
Saved 40% billing time in first month
"Accountune helped us reduce billing errors and track inventory in real time. GST billing is now fast and stress-free."
Sandeep Agarwal
Owner – Garments Shop, Delhi
Cut billing time by 60% with automation
"Billing and stock management is now 2x faster. I highly recommend Accountune to business owners!"
Suresh Verma
Owner – Kirana Store, Indore
Udhaar tracking saved ₹15,000 in dues
"Pehle udhaar ka hisab diary mein tha. Ab Accountune mein sab track hota hai. Ek bhi payment miss nahi hoti."
Meena Joshi
Owner – Medical Store, Pune
Zero expiry losses after using Accountune
"Expiry alerts ne meri bahut badi loss se bacha liya. Batch tracking ab automatic hai. GST bhi sahi hota hai."
Amit Gupta
Owner – Hardware Store, Nagpur
Stock management 3x faster now
"1200 items ka stock manually track karna mushkil tha. Accountune ne sab easy kar diya. Reorder alerts bhi milte hain."
Everything You Want to Know About
Accountune for Medical Stores
Answers for chemists and medical store owners across India — single-counter shops, multi-branch pharmacies, and medical distributors — who want real batch control and GST compliance without complexity.
Try Accountune Free — No Credit Card, Full Access from Day 1
Batch tracking, expiry alerts, GST billing, WhatsApp invoicing — all working on the same day you sign up.
Accountune Accounting and Billing Software
Redefine business accounting for maximum profitability